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Rosetta Inpharmatics rosetta resolver software
Rosetta Resolver Software, supplied by Rosetta Inpharmatics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rosetta+resolver+software/rosetta+resolver+software/pmc11506124-288-21-24
Average 90 stars, based on 1 article reviews
rosetta resolver software - by Bioz Stars, 2026-11
90/100 stars

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Related Articles

Microarray:

Article Title: Characterization of intestinal gene expression profiles in Crohn's disease by genome-wide microarray analysis.
Article Snippet: Results: Analysis of all CD biopsies versus controls showed 259 sequences were upregulated and 87 sequences were downregulated.. Upregulated genes in CD included SAA1 (fold change [FC] þ7.5, P 1⁄4 1.47 10 ) and REGL (FC þ7.3, P 1⁄4 2.3 10 ), whereas cellular detoxification genes including-SLC14A2 (FC-2.49, P 1⁄4 0.00002) were downregulated.. In the CD TI biopsies diubiquitin (FCþ11.3, P < 1 10 ), MMP3 (FCþ7.4, P 1⁄4 1.3 10 ), and IRTA1 (FC-11.4, P 1⁄4 4.7 10 ) were differentially expressed compared to controls.

Software:

Article Title: Characterization of intestinal gene expression profiles in Crohn's disease by genome-wide microarray analysis.
Article Snippet: Results: Analysis of all CD biopsies versus controls showed 259 sequences were upregulated and 87 sequences were downregulated.. Upregulated genes in CD included SAA1 (fold change [FC] þ7.5, P 1⁄4 1.47 10 ) and REGL (FC þ7.3, P 1⁄4 2.3 10 ), whereas cellular detoxification genes including-SLC14A2 (FC-2.49, P 1⁄4 0.00002) were downregulated.. In the CD TI biopsies diubiquitin (FCþ11.3, P < 1 10 ), MMP3 (FCþ7.4, P 1⁄4 1.3 10 ), and IRTA1 (FC-11.4, P 1⁄4 4.7 10 ) were differentially expressed compared to controls.

Article Title: Integrated genomic profiling identifies two distinct molecular subtypes with divergent outcome in neuroblastoma with loss of chromosome 11q.
Article Snippet: .. PCA and hierarchical clustering of expression data were performed using the Rosetta Resolver Software (Version 7.2; Rosetta Inpharmatics LCC, Seattle, WA, USA). ..

Article Title: SOX6 controls dorsal-ventral progenitor parcellation and interneuron diversity during neocortical development
Article Snippet: RNA was amplified via two rounds of in vitro transcription and biotinylated using a BioArray HighYield RNA Transcript Labeling Kit (Enzo), yielding approximately 20–50 μg of labeled cRNA for hybridization , and the quality of the amplified RNA was assessed with a Nanochip in a Bioanalyzer before hybridization on Affymetrix 430.2 GeneChips. .. Homotypic (biological replicates) and heterotypic comparisons (wildtype vs. Sox6 −/− ) were performed using Rosetta Resolver software (Rosetta Inpharmatics). ..

Article Title: Chromosome 17/17q gain and unaltered profiles in high resolution array-CGH are prognostically informative in neuroblastoma.
Article Snippet: Jessica Theissen,* Andre Oberthuer, Anja Hombach, Ruth Volland, Falk Hertwig, Matthias Fischer, Ruediger Spitz, Marc Zapatka, Benedikt Brors, Monika Ortmann, Thorsten Simon, Barbara Hero, and Frank Berthold Departmentof Pediatric Oncology and Hematology,Children’s Hospital,Universityof Cologne,Cologne,Germany Departmentof Theoretical Bioinformatics B080,German Cancer Research Center,Heidelberg,Germany Departmentof Pathology,Universityof Cologne,Cologne,Germany

Article Title: Upregulation of MMP12 and its activity by UVA1 in human skin: potential implications for photoaging.
Article Snippet: Fluorescence signals were detected using Agilent’s Microarray Scanner system, Agilent Feature Extraction Software was used to process intensities. .. Raw intensity data were extracted from Feature Extraction output files using Rosetta Resolver software (Rosetta, Inpharmatics, Kirkland, WA). ..

Article Title: p53 terminates the regenerative fetal-like state after colitis-associated injury
Article Snippet: Microarray image data were processed with Image Analysis/Feature Extraction software G2567AA vA.11.5.1.1 (Agilent Technologies) using default settings and the GE2_1105_Oct12 extraction protocol. .. The extracted dual-color raw data .txt files were further analyzed using R and the associated BioConductor package limma or with the Rosetta Resolver software (Rosetta Inpharmatics LLC). .. Microarray data have been deposited in the Gene Expression Omnibus (GEO; www.ncbi.nlm.nih.gov/geo/ ) of the National Center for Biotechnology Information and can be assessed with the GEO accession number GSE254312.

Article Title: Wnt Signaling in Chronic Rhinosinusitis with Nasal Polyps
Article Snippet: .. Normalized intensities were log2transformed using Rosetta Resolver software (Rosetta Inpharmatics). ..

Article Title: p53 terminates the regenerative fetal-like state after colitis-associated injury.
Article Snippet: Microarray image data were processed with Image Analysis/Feature Extraction software G2567AA vA.11.5.1.1 (Agilent Technologies) using default settings and the GE2_1105_Oct12 extraction protocol. .. The extracted dual- color raw data .txt files were further analyzed using R and the associated BioConductor package limma or with the Rosetta Resolver software (Rosetta Inpharmatics LLC). .. Microarray data have been deposited in the Gene Expression Omnibus (GEO; www.ncbi.nlm.nih.gov/geo/) of the National Center for Biotechnology Information and can be assessed with the GEO accession number GSE254312.

Expressing:

Article Title: Integrated genomic profiling identifies two distinct molecular subtypes with divergent outcome in neuroblastoma with loss of chromosome 11q.
Article Snippet: .. PCA and hierarchical clustering of expression data were performed using the Rosetta Resolver Software (Version 7.2; Rosetta Inpharmatics LCC, Seattle, WA, USA). ..

Gene Expression:

Article Title: Chromosome 17/17q gain and unaltered profiles in high resolution array-CGH are prognostically informative in neuroblastoma.
Article Snippet: Jessica Theissen,* Andre Oberthuer, Anja Hombach, Ruth Volland, Falk Hertwig, Matthias Fischer, Ruediger Spitz, Marc Zapatka, Benedikt Brors, Monika Ortmann, Thorsten Simon, Barbara Hero, and Frank Berthold Departmentof Pediatric Oncology and Hematology,Children’s Hospital,Universityof Cologne,Cologne,Germany Departmentof Theoretical Bioinformatics B080,German Cancer Research Center,Heidelberg,Germany Departmentof Pathology,Universityof Cologne,Cologne,Germany

Extraction:

Article Title: Upregulation of MMP12 and its activity by UVA1 in human skin: potential implications for photoaging.
Article Snippet: Fluorescence signals were detected using Agilent’s Microarray Scanner system, Agilent Feature Extraction Software was used to process intensities. .. Raw intensity data were extracted from Feature Extraction output files using Rosetta Resolver software (Rosetta, Inpharmatics, Kirkland, WA). ..



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